RnoEX0056942 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53761552-53800373:+
Coord C1 exon
chr10:53761552-53761722
Coord A exon
chr10:53762210-53762314
Coord C2 exon
chr10:53800269-53800373
Length
105 bp
Sequences
Splice sites
3' ss Seq
AATCCACATTTTCTGTGTAGGTC
3' ss Score
8.3
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
Seq A exon
GTCCGTGAACTTGAAGGAGAAGTTGAAAACGAACAGAAGCGCAATGTTGAAGCTATCAAGGGTCTGCGCAAACATGAGAGAAGAGTGAAAGAACTCACTTACCAA
Seq C2 exon
GTGAGGGAGCTTGAAAACGAGGTGGAAAATGAACAGAAGCGCAACATTGAAGCTGTCAAGGGTCTTCGCAAGCATGAGAGAAGAGTAAAGGAACTCACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX2-1/41=C1-37
Average complexity
S
Mappability confidence:
83%=100=90%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=0.743 C2=0.914
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
PF0157614=Myosin_tail_1=FE(4.0=100)
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGCGGAGGAGCTGAAG
R:
CTCATGCTTGCGAAGACCCTT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]