MmuEX6086278 @ mm9
Exon Skipping
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67035015-67035968:+
Coord C1 exon
chr11:67035015-67035185
Coord A exon
chr11:67035649-67035753
Coord C2 exon
chr11:67035873-67035968
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAATTCACCTTTTGGTGTAGGTC
3' ss Score
6.79
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGATACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
Seq A exon
GTCCGTGAACTTGAAGGAGAAGTGGAAAATGAACAGAAGCGCAACGTGGAAGCTATCAAGGGTCTGCGCAAACATGAGAGAAGAGTGAAAGAACTCACTTATCAA
Seq C2 exon
ACTGAGGAAGACCGCAAGAATGTTCTCAGGCTCCAGGACCTTGTGGACAAACTGCAATCAAAGGTCAAGGCCTACAAGAGACAAGCTGAGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-'39-42,'39-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.743 C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.4=100),PF057016=WEMBL=FE(15.6=100),PF0026115=Tropomyosin=PU(61.8=73.7)
A:
PF0157614=Myosin_tail_1=FE(7.6=100),PF057016=WEMBL=PD(4.5=45.7),PF0026115=Tropomyosin=PD(35.3=68.6)
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGAAGAAGGAGCAGGA
R:
TCAGCTTGTCTCTTGTAGGCCT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: