DreEX6023577 @ danRer10
Exon Skipping
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41041221-41049095:+
Coord C1 exon
chr6:41041221-41041716
Coord A exon
chr6:41042499-41042630
Coord C2 exon
chr6:41048978-41049095
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTGTTTTTGGACAGACT
3' ss Score
6.23
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGTAAAAGTCATGTTTGTGTGTGTGTTGTGCTACAATGTTAAACCAAGGACTTTAACACAATAGATACCCAGAGAGATTAGTTATTAAGTAACAGTTGTTATTGGTGGAGAAGGTTAGTGCATGGTTTCAGTTTGATTGAGATAAGGGCTGTTTTTCAGTTCCCACATATCAGAGGACATCCTGTCAAATTCTTCAAGTAAAACCTGCTGGAAATTATTCAGCCTGTGACAGTAATATAACTGGACTCGAGCCAGTCAGGCTTTGAGGTTGTAAAGCAGGGTGTGTGTGTGTATGTATGTGTGTGTAGAGGAAAAGTTGGTGAGTGTGCTGTTATGTGTGTGTGTGTGTGTAATGAGCTGAAGATATACTGGGGAAGTGGGAGTTTAACTTCAGTTTCCAGAGGCCCGGCTGGAGTAAAGGTGTGGAGGAATCAACATCCCATATACCTGGCTTCAATATACGGGATATACTTTGTTCATAAAGAAAGGAAAAAAG
Seq A exon
ACTGCAGAAATGGTTCATATGAAGGCTATTTTGCTGGGTGCTGCAATGGCAGCCGTGGCTGTGACAACCATCATCGCTTTGATTCTGGCTCTTGCAAACCGGCAGACTTTGGATCAGCCATACTCAACACAG
Seq C2 exon
TTCGGGATTGTTTTTGATGCCGGCTCCAGCCACACTGCCCTTTTCCTGTACCAGTGGCAGGGAAACAAAGAAAACAACACTGGAATCGTGTCGCAGAAACAGAGCTGCGATGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565-'0-3,'0-0,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
NA
A:
PF0115012=GDA1_CD39=PU(1.9=19.5)
C2:
PF0115012=GDA1_CD39=FE(24.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTGTGTGTGTGTATGT
R:
GCCGGCATCAAAAACAATCCC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]