RnoEX0032275 @ rn6
Exon Skipping
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2288667-2290640:+
Coord C1 exon
chr3:2288667-2289143
Coord A exon
chr3:2290293-2290434
Coord C2 exon
chr3:2290523-2290640
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCCCACCTAACCCTTGCAGCTC
3' ss Score
7.96
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GCCGAGTTTTACCCAGTAACTTATGTTTTAAGAACCCAGCAGATCTGAAGGAGAGTGACTTCCCTTGGCCCACCTACATCAGCTCTGCAGCACCCTTCCGTAGCCTCAGGCAACTGTTCCCTGACCACGTCTGGCCTGGCCCAAGTGAGAAGGACAGAGGACAAGGTCCACAGTAACAGGGAGGGTGTCTCCAGTCCTGTCTTCTCTGTCATTCCCAGGTCAGTTCTAAAGTCCATCCTGAGAACTAGGGACGCCACTCTTCCTCCCTCCCCAGAAGCAAAATGTAACCCCAGGATCGGGATCCGTGAGGCAGAGTGAAATTAGTAGGTGTCTGGCCCAAGCAGCAGCTGGAGAGAAGCCCGCTCCTCCCCCCACAGCCCCAGGTTCAAGTGGGTGGAGACAGGGTGTGGAGACAGGGTGTGGAGGGCAGAAGCAGAACTTCCTCCAGCTACCCTTGAAAGCTGGTATCCAGCGCAG
Seq A exon
CTCAGCCCCTCCCACCATGAGACTTTCCTGGAAGGAACGGGTCTTCATGGTCCTGTTGGGAGTTGCAGCAGCTTCTGGCCTCACCATGCTCATCCTCATCCTGGTGAAAGCAACCAATGTTCTCCTGCCTGCAGACACCAAG
Seq C2 exon
TTTGGGATCCTGTTTGACGCCGGCTCCTCCCACACATCACTGTTTGTGTACCAGTGGCCAGCAAACAAGGAGAAGGACACAGGAGTGGTCAGCCAGGCCCTGGCTTGCCAGGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0115012=GDA1_CD39=PU(1.9=19.0)
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTCCCTCCCCAGAAG
R:
GGCGTCAAACAGGATCCCAAA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]