HsaEX6064295 @ hg19
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140332419-140336268:-
Coord C1 exon
chr9:140335738-140336268
Coord A exon
chr9:140332612-140332757
Coord C2 exon
chr9:140332419-140332536
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCACGGCCGTCCCCCCACAGGAA
3' ss Score
10.33
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGCTGCAGGCGCTTCCGCCCCCGCCCCGGGCCTGGACCTTCGGGGTCACCTGACTCCGACCTGCCCGGGCCGGGCGGCACGGGGGGTAAAGTCCGGGCCGGGGTCAGGAGCGCGGCTGCGGGCCGTGGGGGGCGGGGTCCCGGAGTTCTGCCCCTCGCAGCTCCAGGCTCCTCCTCAGCTTCCCTCTCCTGCCTCCCACCCCCCCGGGGGCGGGGCGACCCTGGGCACCGAGACAGACCCGCGGGTGGGAGATGCGGGGAGACCCTGGGCGGGGGACCCGAGGGTGGAGTGGGCGGGGCGACCTTGGGCGCTGGCCTCAGCCTGCGGGCCCTGGAGCCAGGTGCACAGCGCATCGCCCGAGGCTGTCACCGCCCTGCCCCGCCCACCCCAGCTGTCCTGGACCCAGGGGCAGGGAGAGGCTGGACGCCAGGTGCGCGGACACAGAAGCGTCTAAGCACAGCTTCCTCCTTGCCGCTCCGGGAAGTGGGCAGCCAGCCCAG
Seq A exon
GAACCAGTACCACCTGCACCATGGGGCTGTCCCGGAAGGAGCAGGTCTTCTTGGCCCTGCTGGGGGCCTCGGGGGTCTCAGGCCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG
Seq C2 exon
TTTGGGATCGTGTTTGATGCGGGCTCCTCCCACACGTCCCTCTTCCTGTATCAGTGGCTGGCGAACAAGGAGAATGGCACGGGTGTGGTCAGCCAGGCCCTGGCCTGCCAGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0115012=GDA1_CD39=PU(2.5=19.0)
C2:
PF0115012=GDA1_CD39=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAGGTGCACAG
R:
CCCGTGCCATTCTCCTTGTTC
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)