DreEX6024353 @ danRer10
Exon Skipping
Gene
ENSDARG00000061222 | uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:ZFIN;Acc:ZDB-GENE-121120-4]
Coordinates
chr6:52956850-52960395:+
Coord C1 exon
chr6:52956850-52956947
Coord A exon
chr6:52957510-52957671
Coord C2 exon
chr6:52960231-52960395
Length
162 bp
Sequences
Splice sites
3' ss Seq
AGGAGATATTTTGTTTGCAGAAA
3' ss Score
4.14
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACAGCTACTCCTTCAGTATTTGTGACACTTCAAACTTTTCTGACTATGTGAAGTGTGGAGTGGCAACTGAAGTCAAACAGCCTGAAATCTTGAGCTTT
Seq A exon
AAACCTCTGAATGTGGCTTTGGATGAAGCCCTCCGTGATCCCGGTCTTGTAGAGATGACAGACTATGGTAAGACACAAAGACACCTGTCTCTTCACCTGGCCTTTCAAGCCCTGCATAAATTCACTCAGAAATACAGCCGGACACCCCATCCTAGATCTCAG
Seq C2 exon
GCGGATGCTGAAGTGCTGCTTACCATCACAAAAGAGCTTTGCACAGAGGCTAAGTTTGATGAGCTTGATGAAGACGCTGTGAGGAATTTGTCTCTGGTTGCCAGCGGGGATCTGGCACCCGTCAATGCCTTCATTGGAGGTCTGGCTGCTCAGGAGGTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061222-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTCCTTCAGTATTTGTGACACT
R:
GCAGCCAGACCTCCAATGAAG
Band lengths:
244-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]