DreEX6025831 @ danRer10
Exon Skipping
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11331755-11334530:-
Coord C1 exon
chr2:11334378-11334530
Coord A exon
chr2:11334124-11334287
Coord C2 exon
chr2:11331755-11331806
Length
164 bp
Sequences
Splice sites
3' ss Seq
AATCTTCTCTGTTTTCACAGGCA
3' ss Score
9.43
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTCTCATACGAGTCCATGCATGTGGTGTAAACCCAGTGGAAACATACATCCGCTCTGGATCTTATGCTCGGAAACCCAGTTTGCCCTATACTCCAGGATCAGATGTCTCCGGTGTGGTTGAAGCTGTTGGCGAAGGTGTTTGCCTCCTACAG
Seq A exon
GCAGGTGACAGAGTCTTTACCACAGGCACAGTGACAGGAGGATATGCTGAGTATACGGTGGCCTCAGAGGACACTGTTCACAAGCTGCCCGATTCCCTAAACTACTGTCAGGGTGCAGCAATGGGAGTTCCGTATTTCACTGCATACCGGGCTCTCGTTCACAA
Seq C2 exon
GGCCCATGCAAAACCAGGAGAAACCGTTCTTATCCATGGAGCCAGTGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(75.8=100)
A:
PF082407=ADH_N=PD(16.7=20.0)
C2:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATACGAGTCCATGCATGTG
R:
CCACCACTGGCTCCATGGATA
Band lengths:
202-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]