BtaEX6017043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70253841-70264181:+
Coord C1 exon
chr3:70253841-70253993
Coord A exon
chr3:70257567-70257730
Coord C2 exon
chr3:70264130-70264181
Length
164 bp
Sequences
Splice sites
3' ss Seq
TAATTTATTGCTTTCCACAGAAA
3' ss Score
8.11
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTCTCATCAAAGTCCAAGCGTGTGGTGTAAACCCAGTGGACACATACATTCGCTCTGGTACTCACAATATAAAACCACTTCTACCTTATACTCCTGGCTTCGATGTGGCTGGGATAATAGAAGCTGTTGGAGAGAGTGTATCTGCTTTCAAG
Seq A exon
AAAGGTGACAGAGTTTTCACTACCAGGACCATCTCTGGGGGCTATGCTGAGTATGCTCTGGCAGCCGATCACACTGTTTACACACTGCCAGAAAAGCTGGACTTTAAACAAGGAGCTGCCATCGGCATCCCATACTTTACTGCTTATCGAGCTCTGCTCCACAG
Seq C2 exon
TGCCTGTGTGAAACCTGGAGAAAGTGTTCTGGTTCATGGAGCTAGTGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162-'8-11,'8-8,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(33.8=100)
A:
PF082407=ADH_N=FE(36.5=100)
C2:
PF082407=ADH_N=FE(11.5=100),PF0010721=ADH_zinc_N=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCAAAGTCCAAGCGTGT
R:
CCTCCACTAGCTCCATGAACC
Band lengths:
202-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]