GgaEX1017742 @ galGal3
Exon Skipping
Gene
ENSGALG00000011361 | CRYZ
Description
NA
Coordinates
chr8:30438027-30439772:-
Coord C1 exon
chr8:30439620-30439772
Coord A exon
chr8:30438853-30439016
Coord C2 exon
chr8:30438027-30438078
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCCCTGCTTTCAAGAAA
3' ss Score
5.69
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GTGTTGATTAAGGTCCACGCCTGCGGGGTAAACCCTGTGGAGACCTACATCCGTTCTGGGAACTACGCGAGAAAACCGGCCTTGCCTTACACGCCCGGCTCCGACGTGGCTGGTGTGATTGAGGGTGTTGGGGGACGCGTGACTGCATTCAAG
Seq A exon
AAAGGTGACAGGGTTTTTACCTCTGCTACGCTCTCTGGAGGATATGCAGATTATGCAGTTGCTGAAGCTGATACAGTCTTTCCTTTGTCGGACAAGTTGAGTTTCAGTCAAGGAGCAGCGATTGCAATACCCTACTTCACTGCTTACCGTGCTCTTTTCCTAAA
Seq C2 exon
AGGGCATGCCAAAGCAGGGGAAAGCGTGCTAATTCATGGTGCAAGTGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361-'6-4,'6-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(52.1=100)
A:
PF082407=ADH_N=PD(42.7=74.5)
C2:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATTAAGGTCCACGCCTGC
R:
GCCTCCACTTGCACCATGAAT
Band lengths:
202-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]