RnoEX0024739 @ rn6
Exon Skipping
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260895037-260902311:+
Coord C1 exon
chr2:260895037-260895189
Coord A exon
chr2:260899868-260899964
Coord C2 exon
chr2:260902260-260902311
Length
97 bp
Sequences
Splice sites
3' ss Seq
AGAATTCGCTCTTTCGGCAGATA
3' ss Score
6.35
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCTAATCAAAGTCCATGCCTGCGGCGTCAACCCCGTAGAGACATACATTCGCTCCGGGACCTACAGTCGGAAGCCTGCCTTACCCTACACTCCAGGCAGCGATGTGGCTGGGATCATAGAATCTGTTGGAGATGGTGTGTCTGCTTTCAAG
Seq A exon
ATAACACCACCTACCCCCTGCCCGAGACACTGGACTTCAGGCAGGGGGCTGCCCTGGGGATTCCGTACTTCACGGCCTGCCGAGCTCTGTTCCACAG
Seq C2 exon
TGCCCGTGCTCGAGCTGGGGAAAGCGTTCTTGTTCACGGGGCCAGCGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319-'11-11,'11-10,12-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=FE(47.6=100)
A:
PF082407=ADH_N=PD(47.6=90.9)
C2:
PF0010721=ADH_zinc_N=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAAGTCCATGCCTGCGG
R:
AACAAGAACGCTTTCCCCAGC
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]