DreEX6028686 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42779402-42781221:-
Coord C1 exon
chr2:42781097-42781221
Coord A exon
chr2:42780594-42780708
Coord C2 exon
chr2:42779402-42779508
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTGTTTTTGTCAGGTA
3' ss Score
9.3
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ATGCCCGGTCAGTTTGAGCAGACTGTGGTCCTCAATCAGCTCAGATATTCTGGGATGTTGGAAACAGTGAAAATCAGACGTTCTGGGTTTCCCATCAGGAGGACGTTTAAGGATTTCTGTTCCAG
Seq A exon
GTACTATGTGTTGATGAGGGCTTTGGCTTTGTCAGAGGACCTTAAGGGGCGGAGTCTCTTGCTGCTGCAGCTCTATGACAACAGCGGTGCTGAATGGCAGCTGGGAAAAAACAAA
Seq C2 exon
GTGTTTATGAGAGAGAGTTTGGAGCTGCGGTTAGAAAAACAAAGAGAAACAGAAGTTCTCAAAGCAGCATCAATTATCCAAGCTCATATACTGGGCTACAGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'25-20,'25-19,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGTCAGTTTGAGCAGAC
R:
GCTCTGTAGCCCAGTATATGAGC
Band lengths:
226-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]