RnoEX0057143 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78034048-78036164:+
Coord C1 exon
chr2:78034048-78034172
Coord A exon
chr2:78034305-78034419
Coord C2 exon
chr2:78036058-78036164
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCCCTTTGCTGCAGATA
3' ss Score
8.65
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGCCAGACCAGTTTGATCAGGCCGTCGTGCTCAACCAGCTGCGCTACTCTGGGATGCTGGAGACGGTGAGGATTCGAAAGGCAGGATATGCAGTCCGAAGACCCTTTCAGGATTTTTACAAAAG
Seq A exon
ATATAAAGTGCTGATGAGGGACTTGGCTCTGCCTGAGGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGTTCTATGATGCTTCTAACAGCGAGTGGCAACTGGGGAAGACCAAG
Seq C2 exon
GTCTTCCTTCGGGAATCCTTGGAGCAGAAACTGGAGAAGAGGCGGGAAGAGGAGATTGACCGGGCAGCCATGGTCATCCGAGCTCACATCTTAGGCTACTTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'37-33,'37-32,38-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.9=100)
A:
PF0006316=Myosin_head=FE(9.2=100)
C2:
PF0006316=Myosin_head=PD(0.7=8.3),PF0061222=IQ=PU(76.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCAGTTTGATCAGGCC
R:
CGTGCCAAGTAGCCTAAGATGT
Band lengths:
229-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]