HsaEX6097487 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16704688-16711354:-
Coord C1 exon
chr5:16711230-16711354
Coord A exon
chr5:16711017-16711131
Coord C2 exon
chr5:16704688-16704794
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTTCACGTTGCAGGTA
3' ss Score
10.61
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
ATGCCAGACCAGTTTGACCAGGCGGTTGTGCTGAACCAGCTGCGGTACTCAGGGATGCTGGAGACTGTGAGAATCCGCAAAGCTGGGTATGCGGTCCGAAGACCCTTTCAGGACTTTTACAAAAG
Seq A exon
GTATAAAGTGCTGATGAGGAATCTGGCTCTGCCTGAGGACGTCCGAGGGAAGTGCACGAGCCTGCTGCAGCTCTATGATGCCTCCAACAGCGAGTGGCAGCTGGGGAAGACCAAG
Seq C2 exon
GTCTTTCTTCGAGAATCCTTGGAACAGAAACTGGAGAAGCGGAGGGAAGAGGAAGTGAGCCACGCGGCCATGGTGATTCGGGCCCATGTCTTGGGCTTCTTAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'33-37,'33-35,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(48.8=97.6)
A:
PF0006316=Myosin_head=FE(45.2=100)
C2:
PF0006316=Myosin_head=PD(3.6=8.3),PF0061222=IQ=PU(76.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGACCAGTTTGACCAG
R:
CAAGACATGGGCCCGAATCAC
Band lengths:
218-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)