DreEX6031364 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21386341-21391853:+
Coord C1 exon
chr1:21386341-21386472
Coord A exon
chr1:21390461-21390632
Coord C2 exon
chr1:21391707-21391853
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGTATGTGCATGTTTGCAGGCT
3' ss Score
7.24
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GATATGACCATAGCAGCAGCCTGTGCTCCTCCTGGTGGAGGTCGTAATCCTGTGACCCCTCGTTTCATCCGGCACTTCAGCATGCTGTGCCTCCCAACACCCTCTGAGAGCAGCCTCAAACAGATTTTTAAG
Seq A exon
GCTATTTTGGGTGGTTTTCTTACCGAATTTTCCACGGCGGTCAAGCAGGCTGCTGACAGCATTGTGGACGCTGCTGTTGAGATCTACCATCGCATGAGTGTAGATCTGCTACCTACACCAGCCAAATCCCATTACGTGTTCAACCTTCGAGACCTGTCTAAATGTGTGCAGG
Seq C2 exon
GTATGCTGCAGTGTGAGCCAACTACGGTTAGAGATCAAACCCATATCTTCCGTTTGTTCTGTCATGAGTGTCAACGTGTCTTCCACGATCGACTCATAAACAACGAAGACAAAAGCTACTTCAATACCATGATCTCTGAGATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.8=100)
A:
PF127752=AAA_7=FE(21.0=100)
C2:
PF127752=AAA_7=PD(8.1=44.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGAGGTCGTAATCCT
R:
TGGCCATCTCAGAGATCATGGT
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]