HsaEX6014179 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84904129-84912596:+
Coord C1 exon
chr2:84904129-84904260
Coord A exon
chr2:84908481-84908652
Coord C2 exon
chr2:84912450-84912596
Length
172 bp
Sequences
Splice sites
3' ss Seq
TATTATGTTTCTGGTTCTAGGCC
3' ss Score
9.83
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GATGTAACAATCATATCGGCATGTGCACCTCCAGGCGGTGGCCGCAACCCTGTGACTCCCCGCTTCATCAGACACTTCAGCATGCTGTGCCTCCCAATGCCCTCAGAGCACAGTCTGAAACAGATTTTTCAG
Seq A exon
GCCATCTTAAATGGTTTCCTGAGTGACTTTCCACCAGCTGTAAAGCAAACTGCATCAAGCATTGTAGAAGCCTCAGTTGAGATTTATAACAAAATGAGTGTTGACCTCCTGCCAACACCCGCCAAGTCCCATTATGTCTTTAACTTGAGGGACTTATCCAAATGTGTGCAAG
Seq C2 exon
GTATCCTCCAATGTGATCCAGGAACAATAAGAGAAGAAATTCAGATATTTAGACTCTTTTGCCATGAGTGCCAAAGGGTCTTCCATGATCGCTTGATTAATAATGAAGATAAGCACTATTTCCATGTTATTCTGACAGAAATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'44-44,'44-43,45-44=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.8=100)
A:
PF127752=AAA_7=FE(21.0=100)
C2:
PF127752=AAA_7=PD(8.1=44.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATCGGCATGTGCACCTCC
R:
TGTCAGAATAACATGGAAATAGTGCT
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)