RnoEX0028550 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101031721-101034722:-
Coord C1 exon
chr4:101034591-101034722
Coord A exon
chr4:101033498-101033669
Coord C2 exon
chr4:101031721-101031867
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTTATGTTTCTGATTCTAGGCC
3' ss Score
8.8
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GATGTAACAATTGTATCAGCATGCGCACCTCCAGGAGGGGGTCGCAATCCTGTGACACCCCGCTTCATTCGACACTTCAGCATGCTGTGCCTCCCCATGCCCTCAGAGCACAGTCTGAAGCAGATTTTTCAG
Seq A exon
GCCATCTTGAATGGCTTCCTGGCTGACTTTACAGAAGCAGTAAAGCAAACTTCATCAAACATTGTAGAGGCCGCAGTTGAGATTTATAACAGGATGAGTGTCGATCTCCTGCCAACCCCAGCCAAGTCCCATTACGTCTTTAACCTGAGAGACTTATCCAAGTGTGTGCAAG
Seq C2 exon
GTATTCTCCAATGTGACCCGGGAACAATAAGAGAAGAAATGCAGATATTTAGACTATTTTGCCACGAATGTCAGAGAGTGTTCCATGACCGCCTGATCAATAACGAAGACAAGCACTACTTCCATGTCATTTTGACAGAAATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'41-46,'41-45,42-46
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.8=100)
A:
PF127752=AAA_7=FE(21.0=100)
C2:
PF127752=AAA_7=PD(8.1=44.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTATCAGCATGCGCACCT
R:
TGGAAGTAGTGCTTGTCTTCGT
Band lengths:
247-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]