DreEX6031368 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21374061-21381186:+
Coord C1 exon
chr1:21374061-21374243
Coord A exon
chr1:21376021-21376164
Coord C2 exon
chr1:21380965-21381186
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTGTGTTTTTGCAGGAA
3' ss Score
11.85
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATTTCCGATCCTGTTCGCGGATATCTGATGGAGCTGTTTGAACAGTATGTGGAGAAAGGTCTGCAGTTTGCATCAAAGCACTGTGTGCAGGCTGTTGCTCAGGTGGACATCAGTAAAGTCACAACCCTCTGCTGCCTTTTGGAAGCGTTACTGTTCAGCGATGGTGCCCCTAGCCTCAAAATG
Seq A exon
GAATCCAGTAAGTTGAACAATGTGTTGTGTCAGACGTTTGTGTTCTGCTACCTCTGGGCAGTTGGGGGAAATTTAATTGAAAGCCACTGGGATACTTTTGACACCTTCGTCAGGCAGCAGTTTGAGGACAATACTGATGCAAAG
Seq C2 exon
TTGTCCAGCGTAGGTGATTTATGGAGCGTCTATATGAACTTTGATATTAAATGTTTGGAGCCATGGGAAAGGATCATTCCCGTCTTCAGTTATAACAGTGAGATACCCTTCTTTGAGATGCTGGTACCCACCACAGACACAGTGAGGTACGGATACCTGATGGAAAAACTGCTGTCTGTCAATCACTCTGTCCTCTTCACTGGCATCACTGGTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(16.5=60.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTACTGTTCAGCGATGG
R:
TGCCAGTGAAGAGGACAGAGT
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]