MmuEX6004935 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73121780-73124797:-
Coord C1 exon
chr6:73124615-73124797
Coord A exon
chr6:73123750-73123893
Coord C2 exon
chr6:73121780-73122001
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTATACTTTCAGGAA
3' ss Score
9.35
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAATGACGAAGTCCAAGAATATTTATTGAATCTTTTCAATCGTTATGTTGATGATGGGTTGCATTTTGTGAACAAAAAGTGCACCCAAGCTATCCCACAGGTGGACATCAGCAAAGTGACCACACTGTGCTGCCTGCTGGAGTCTCTGCTGCTCAGCAAAGATGGAAATATCTTGTCAATG
Seq A exon
GAACAAATGAAGCTGAACACTGTACTGTGCCAGACTTTTGTGTTCTGTTACTTGTGGTCTCTGGGTGGAAACTTAACTGAAAATTACTGGGATTCTTTTGATACATTTATTAGAACACAATTTGATGATAATCCTGATGCCAGG
Seq C2 exon
CTTCCCAGCTCTGGAGATCTGTGGAGCATTCATATAGACTTTGACACCAAACGCCTGGACCCCTGGGAGCGCATTATACCCACCTTCAAGTACAGCAGGGATGTCCCATTCTTTGAGATGCTTGTCCCCACAACAGACACAGTGCGCTATGGCTATCTAATGGAAAAGCTGCTGGCCGTCAGGCATTCGGTGTTGTTTACGGGAACAACTGGCGTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(16.5=60.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGCACCCAAGCTATCCC
R:
CCATAGCGCACTGTGTCTGTT
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types