RnoEX0028549 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101041012-101045345:-
Coord C1 exon
chr4:101045163-101045345
Coord A exon
chr4:101044241-101044384
Coord C2 exon
chr4:101041012-101041233
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTATACTTTCAGGAA
3' ss Score
9.35
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAGTGAAGAAATCCGAGAATATTTATTGAATCTTTTCAATCGTTATGTCGATGATGGGTTACGTTTTGTAAACAAAAAGTGCACCCAAGCTATCCCACAGGTGGACATCAGCAAAGTGACCACACTCTGCTGCCTACTGGAGTCTTTGCTGCTCAGCAAAGATGGAAATATCTTGTCACTG
Seq A exon
GAACAAATGAAGCTGAACACTGTAGTGTGCCAGACTTTTGTGTTCTGTTATTTGTGGTCTTTGGGTGGAAACTTAACTGAAAATCACTGGGATTCTTTTGATACGTTTATTAGAACACAATTTGATGATAATCCTGATGCCAGG
Seq C2 exon
CTTCCCAGCTCTGGAGATCTGTGGAGCATTCATGTAGACTTTGACACCAAACGCCTGGACCCCTGGGAACGAATCATACCCACCTTCAAGTACAGCAGGGAGGTCCCGTTCTTTGAGATGCTTGTCCCAACAGCAGACACGGTGCGGTACGGCTATCTAATGGAAAAGCTGCTGGCGGTCAGGCACTCAGTGTTGTTTACTGGAACAACTGGAGTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'36-41,'36-40,37-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(16.5=60.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGCCTACTGGAGTCT
R:
AACAACACTGAGTGCCTGACC
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]