DreEX6031374 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21353885-21357029:+
Coord C1 exon
chr1:21353885-21354040
Coord A exon
chr1:21354489-21354650
Coord C2 exon
chr1:21356892-21357029
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTACTCATTTTTATCATAGGAT
3' ss Score
8.03
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTGGATTCTAGCGATAATTTCGAGTGGCAGAGGCAGTTGCGATATTATTGGGATGTGGATCTGGATGATTGTGTGGCCCGGATGGCACTTTCTCAATATATTTATGGATATGAATATTTGGGAGCATGTCCCCGTCTAGTAATCACTCCACTGACG
Seq A exon
GATCGCTGTTACCTCTGCCTAATGGGAGCGCTGCAGCTGGATCTCGGAGGAGCTCCTGCAGGTCCAGCAGGCACAGGCAAAACTGAGACCACAAAAGACCTTGCAAAGGCTCTGGCAATCCAATGTGTGGTGTTTAACTGCTCAGATGGACTTGACTATAAG
Seq C2 exon
ATGATGGGGACATTCTTCAGCGGTTTGGCTCAGTCAGGTGCCTGGTGCTGCTTTGATGAGTTCAATCGCATTAACATCGAAGTGCTGTCAGTCATTGCTCAACAACTTATCACTATTAGAAATGCCAAGGCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'30-33,'30-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.9=45.3)
A:
PF127742=AAA_6=FE(22.9=100)
C2:
PF127742=AAA_6=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCGAGTGGCAGAGGCAG
R:
TGAGCAATGACTGACAGCACT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]