MmuEX6004929 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73092255-73094809:-
Coord C1 exon
chr6:73094654-73094809
Coord A exon
chr6:73094004-73094165
Coord C2 exon
chr6:73092255-73092392
Length
162 bp
Sequences
Splice sites
3' ss Seq
CAATTGACTGTTTTCTTCAGGAT
3' ss Score
7.93
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GTCGACTCAGCCGACTCCTTCGACTGGCAGCGGCAACTGCGCTATTACTGGGACATGGACCTGGATAACTGCGTGGCTAGAATGGCGTTGTCCCAGTACACCTATGCCTATGAGTACTTGGGAGCGTGCCCGAGGCTGGTCATCACTCCTCTCACA
Seq A exon
GATCGCTGCTACCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCGGCTGGCACAGGGAAAACAGAGACCACCAAAGACCTAGCAAAAGCCCTCGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
Seq C2 exon
ATGATGGGGCGCTTCTTCAGTGGCTTGGCACAGTCAGGGGCCTGGTGCTGCTTTGACGAATTCAACCGGATTGACATAGAAGTCCTGTCGGTCATTGCCCAGCAACTCATCACCATTAGGAATGCCAAAGCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.4=32.7)
A:
PF127742=AAA_6=FE(22.9=100)
C2:
PF127742=AAA_6=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCGCTATTACTGGGA
R:
GCGGCTTTGGCATTCCTAATG
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: