HsaEX6014190 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84851589-84861765:+
Coord C1 exon
chr2:84851589-84851744
Coord A exon
chr2:84852026-84852187
Coord C2 exon
chr2:84861628-84861765
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAATGCATTGCTTTCTTCAGGAT
3' ss Score
7.23
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTGGAGACAGTTGAATCTTTTGACTGGCAGAGACAACTGCGCTATTACTGGGATATAGACCTGGATAATTGTGTGGCTAGAATGGCGCTCTCTCAGTACACTTATGGCTATGAATATTTGGGTGCATGCCCAAGATTGGTTATTACTCCACTCACA
Seq A exon
GATCGCTGCTATCTTTGCCTCATGGGAGCTTTGCAGCTTGACCTTGGGGGTGCACCAGCTGGTCCTGCTGGCACTGGGAAAACAGAGACTACCAAAGATCTGGCAAAAGCTCTTGCCATCCAGTGTGTGGTCTTTAACTGTTCAGATGGTTTGGACTACAAG
Seq C2 exon
ATGATGGGGCGCTTCTTCAGTGGCTTGGCACAGTCAGGGGCCTGGTGCTGCTTTGATGAATTTAATCGAATTGACATAGAAGTTCTGTCCGTCATCGCGCAGCAACTCATTACCATTAGGAACGCCAAAGCGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'30-31,'30-29,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(7.4=32.7)
A:
PF127742=AAA_6=FE(22.9=100)
C2:
PF127742=AAA_6=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACTGCGCTATTACTGGG
R:
ATGGTAATGAGTTGCTGCGCG
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)