GgaEX0004139 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4885368-4886785:-
Coord C1 exon
chr15:4886602-4886785
Coord A exon
chr15:4885927-4886061
Coord C2 exon
chr15:4885368-4885520
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGTCTGTCTTCAAAGGCT
3' ss Score
7.46
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CATTCTGCAGGCTCAGGAGTTTGAATGGGAAAGCCAGCTGCGCTTCTACTGGGACCGAGAGCCAGATGAGCTGAACGTGCGGCAGTGTACAGGCACATTTTCATATGGTTATGAGTACATGGGTTTGAATGGACGTCTTGTGATCACCCCGCTTACAGACCGTATTTATCTCACATTAACACAG
Seq A exon
GCTTTATCAATGTTTTTGGGAGGAGCACCAGCAGGGCCAGCAGGTACAGGGAAAACAGAAACAACCAAGGATCTGGCCAAAGCACTGGGCTTGCTGTGTGTGGTGACAAACTGTGGAGAAGGCATGGATTTCAAA
Seq C2 exon
GCAGTTGGTAAAATCTTCTCTGGTCTTGCCCAGTGTGGAGCATGGGGATGCTTTGATGAATTCAATCGTATCGATGCTTCTGTGCTTTCAGTCATTTCTTCTCAGATTCAAGTTATTCGAAATGCTTTAATGAATCGTCTGAAAACATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'35-42,'35-41,37-42
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
PF127742=AAA_6=FE(19.0=100)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATGGGAAAGCCAGCTGC
R:
AGCACAGAAGCATCGATACGA
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]