MmuEX6021076 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124775345-124777969:+
Coord C1 exon
chr5:124775345-124775528
Coord A exon
chr5:124777159-124777293
Coord C2 exon
chr5:124777817-124777969
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTACATGTGGCTGCTCACAGGCG
3' ss Score
6.81
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CATCCTTGAGGCCCGGGAGTTTGAGTGGGAGAGCCAGCTCCGCTTCTACTGGGACCGCGAGCCAGATGAGCTCAACATCCGCCAGTGCACTGGGACCTTCAGCTACGGCTATGAGTACATGGGCCTCAACGGGAGGCTGGTCATCACGCCCCTTACAGACCGCATCTACCTGACGCTCACACAG
Seq A exon
GCGCTGTCCATGTATCTGGGAGGTGCCCCTGCTGGTCCAGCAGGAACCGGCAAGACAGAGACCACCAAGGACCTCGCCAAAGCCCTGGGCCTCCTGTGTGTTGTCACAAACTGTGGTGAAGGCATGGATTACAAG
Seq C2 exon
GCTGTCGGGAAGATCTTCTCTGGCCTTGCCCAGTGTGGCGCGTGGGGCTGCTTCGATGAGTTCAACCGGATCGATGCCTCCGTGCTGTCTGTCATCTCGTCTCAGATCCAGACAATCCGCAATGCGCTGATCCATCAGCTGACCACGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'25-46,'25-35,36-46=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
PF127742=AAA_6=FE(19.0=100)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGAGTGGGAGAGCCAG
R:
GCATCGATCCGGTTGAACTCA
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types