DreEX0003635 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27735130-27737922:+
Coord C1 exon
chr5:27735130-27735313
Coord A exon
chr5:27735404-27735538
Coord C2 exon
chr5:27737770-27737922
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACATTGTATGATAATCTCAGGCC
3' ss Score
3.1
5' ss Seq
ATGGTTAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
CATCACAGATGCTCGTGAGTTTGAATGGGAGAGTCAGTTGAGATTCTACTGGGTGAAAGAGCCTGATGAGCTGTTTGTGCGGCAGTGCAGTGCTCAGTTCTGCTACGGCTATGAGTACATGGGACTGAACGGCCGACTGGTCATTACTCCCCTGACTGACCGCATCTATCTCACACTTACTCAG
Seq A exon
GCCTTGTCTATGTTCCTGGGTGGAGCACCTGCCGGACCTGCGGGTACAGGCAAAACTGAATCCACTAAAGATCTGGCTAAAGCTTTGGGACTTTTGTGTGTGGTCACCAACTGCGGCGAGGGCATGGACTACATG
Seq C2 exon
GCTGTGGGGAAGATTCTCTCTGGTTTAGCTCAGTGTGGAGCCTGGGGCTGTTTTGACGAGTTCAATCGCATTGACGCCTCAGTGCTGTCTGTCATCTCATCCCAGATCCAAACAATCAGAAACGCTCTCATGCTGCACCTCCAGAGATTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.3=41.9)
A:
PF127742=AAA_6=FE(19.0=100)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCTCAGTTCTGCTACGG
R:
ATCTCTGGAGGTGCAGCATGA
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]