BtaEX6072218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54129791-54133258:-
Coord C1 exon
chr17:54133075-54133258
Coord A exon
chr17:54131063-54131197
Coord C2 exon
chr17:54129791-54129943
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGCATTTGACTTCTGACAGGCA
3' ss Score
6.46
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATTCTCGAGGCCCGGGAGTTTGAATGGGAAAGTCAGCTGCGTTTTTACTGGGACCGGGAACCAGATGAGCTGAACATCCGCCAGTGCACGGGCACCTTCGGATACGGCTACGAGTACATGGGTTTGAACGGGCGGCTGGTTATCACGCCCCTGACGGACCGGATCTACCTGACGCTCACCCAG
Seq A exon
GCACTGTCCATGTATCTGGGTGGGGCTCCTGCTGGTCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCCAAAGCCTTGGGCTTGCTCTGTGTCGTAACCAACTGCGGCGAAGGCATGGATTACAAA
Seq C2 exon
GCCGTCGGGAAGATCTTCTCGGGCCTCGCTCAGTGCGGGGCTTGGGGCTGCTTCGATGAGTTTAATCGCATTGATGCCTCTGTGTTGTCAGTCATCTCGTCCCAGATTCAGACGATAAGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(11.2=41.9)
A:
PF127742=AAA_6=FE(19.0=100)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGTTTTTACTGGGACC
R:
TCTGGGACGAGATGACTGACA
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]