DreEX6031375 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21349994-21354650:+
Coord C1 exon
chr1:21349994-21350119
Coord A exon
chr1:21353885-21354040
Coord C2 exon
chr1:21354489-21354650
Length
156 bp
Sequences
Splice sites
3' ss Seq
AATGTATTCTGTGTTTGTAGGTG
3' ss Score
8.33
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
AGACTGAATGCTCTTGCTGCTTTGGTCCGTGGGAATTTGCCTAGTCTTCATCGGAACATCATCACAGCTCTCATCACCATAGATGTGCATGCCAGAGATATCGTCACAGATCTCGTCAAAGAGCAG
Seq A exon
GTGGATTCTAGCGATAATTTCGAGTGGCAGAGGCAGTTGCGATATTATTGGGATGTGGATCTGGATGATTGTGTGGCCCGGATGGCACTTTCTCAATATATTTATGGATATGAATATTTGGGAGCATGTCCCCGTCTAGTAATCACTCCACTGACG
Seq C2 exon
GATCGCTGTTACCTCTGCCTAATGGGAGCGCTGCAGCTGGATCTCGGAGGAGCTCCTGCAGGTCCAGCAGGCACAGGCAAAACTGAGACCACAAAAGACCTTGCAAAGGCTCTGGCAATCCAATGTGTGGTGTTTAACTGCTCAGATGGACTTGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(7.4=32.7)
C2:
PF127742=AAA_6=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCTTGCTGCTTTGGTCC
R:
CACATTGGATTGCCAGAGCCT
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]