MmuEX6004928 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73094004-73095020:-
Coord C1 exon
chr6:73094895-73095020
Coord A exon
chr6:73094654-73094809
Coord C2 exon
chr6:73094004-73094165
Length
156 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGTCACCGATGCAGGTC
3' ss Score
7.89
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAATCTTCCTAAATTACACAGAAACATCATCACTGCATTGATTACCATTGATGTGCACGCAAGAGATATAGTTTCTGAGCTGGTTCAAGCCAAG
Seq A exon
GTCGACTCAGCCGACTCCTTCGACTGGCAGCGGCAACTGCGCTATTACTGGGACATGGACCTGGATAACTGCGTGGCTAGAATGGCGTTGTCCCAGTACACCTATGCCTATGAGTACTTGGGAGCGTGCCCGAGGCTGGTCATCACTCCTCTCACA
Seq C2 exon
GATCGCTGCTACCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCGGCTGGCACAGGGAAAACAGAGACCACCAAAGACCTAGCAAAAGCCCTCGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(4.9=26.2)
A:
PF127742=AAA_6=PU(7.4=32.7)
C2:
PF127742=AAA_6=FE(22.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGCCCTGGCCGCAATAG
R:
GAAGACCACACACTGGATGGC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: