RnoEX6013923 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101080437-101081495:-
Coord C1 exon
chr4:101081370-101081495
Coord A exon
chr4:101081133-101081288
Coord C2 exon
chr4:101080437-101080598
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCGTTTCTATCCGGTGTAGGTA
3' ss Score
7.96
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAGTCTTCCTAAATTACACAGAAACATCATAACTGCATTGATCACCATTGATGTGCATGCAAGAGATATAGTTTCTGAATTGGTTCAATCCAAG
Seq A exon
GTAGACTCAGCGGAGTCCTTTGACTGGCAGCGGCAGCTGCGCTACTACTGGGACGTAGACCTGGATAACTGTGTGGCTAGAATGGCGCTATCTCAGTACACCTATGCCTACGAGTACTTGGGAGCATGCCCGAGACTGGTCATCACTCCGCTCACA
Seq C2 exon
GATCGCTGCTATCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCTGCTGGCACTGGGAAAACAGAGACTACTAAAGACCTAGCAAAAGCGCTTGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(7.4=32.7)
C2:
PF127742=AAA_6=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGCCCTGGCCGCAATAG
R:
GAAGACCACACACTGGATGGC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]