DreEX6031391 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21320948-21323907:+
Coord C1 exon
chr1:21320948-21321037
Coord A exon
chr1:21323549-21323669
Coord C2 exon
chr1:21323756-21323907
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTATGCTCCTTCCCCATCAGCAA
3' ss Score
6.28
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GTTGAGGAGAAAATATGTGGGGATGGTCCTAGTGTGGAGGAAATTCTTGAAGAAGATGCTTATCTGCAAAACATCATTCTTAACATTAAG
Seq A exon
CAATCAATTCAGACTGCATTCGTTACTGCTAACGTATACGCTCGGACATTTGAGCCGTTCAGACTGTTTTACAAAGAGAATGAAGACCTGGACCTGGAGGCTCTCAAAGAGCAAGAGCATG
Seq C2 exon
AGGTTGCGTTTTTTGAGAACAGTCTGGATAAATATCATCAAGAGCATAAAGAAGCTTTAGCCATCCAACAGAAGAGACCTCTGGGAATTCTACTGGTGGACACTACAAAACTGAAGCACAGACTTATACCATCTCCTCTGCGCTGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGGAGAAAATATGTGGGGA
R:
CTCAATGCAGCGCAGAGGAG
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]