MmuEX6004913 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73129703-73138524:-
Coord C1 exon
chr6:73138324-73138524
Coord A exon
chr6:73131701-73131821
Coord C2 exon
chr6:73129703-73129854
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTCATCTGTCACCACTTAGGAA
3' ss Score
6.98
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATGGCATTTCTGGGGCAATTAATCACTTTGAAAACACGGTGTTGTCAGTTCCTAATCTGGTGCCTGACTCGTACTTTGACGCTTTCACCAGCCCGTTCATTAACAAGAAGGTTGAGGAAAAGACCTGCGGGCCCGGGCCCAACCTGTCAGCCGTGTTTGAGGATGACAGGAACTTTCTCACCATCATCATGCAAATAAAG
Seq A exon
GAAACAATTCACGCAGCGTTCGACTCTGCACGCTTGTACGCAGCGACATTTGAAAAGTTTCAGTTATTCTTCAAGGAAAACGAGAGTCTGGATCTAGAAGCCCTGAAGCAGGAGGAGCCTG
Seq C2 exon
ATGTCCAATTCTTCAGTTCCCAGCTGGAAAAATACCATAAACAGCACAAGGACTCGGTAGCCCTGAGACCCACCCGAAACGTAGGCCTGCTGCTTATCGACACCAAGCAGCTGAAGGAGAAGCTGATCCCATCACCGCTGCGGTGCTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGCCTGACTCGTACTT
R:
AGCTGCTTGGTGTCGATAAGC
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: