RnoEX6013908 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101098738-101135615:-
Coord C1 exon
chr4:101135415-101135615
Coord A exon
chr4:101124652-101124772
Coord C2 exon
chr4:101098738-101098881
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTCATCTGTGTCCCACTTAGGAA
3' ss Score
9.25
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATGGCATTTCTGGGATAATTAACCACTTTGAAAACACGGTGTTGTCAGTTCCTAATCTGGTGCCGGACTCTTACTTTAACGCTTTCACCAGCCCTTTCATTAACAAGAAGGTTGAGGAGAAGACCTGTGGCCCGGGGCCGAGCCTCTCAGCCGTGTTTGAGGATGATCGGAACTTTCTCACCATCATCCAGCAAATAAAG
Seq A exon
GAAACGATTCACTCAGCGTTTGACTCTGCACGCCTGTACGCAGCGACATTCGAAAAGTTTCAGATATTCTTCAAGGAAAATGAGAGTCTTGATCTGGAGGCACTGAAGGAGGAGGAGCCTG
Seq C2 exon
TCCAAATTTGACTGCTTGGACCCAGAGGTCCTAAACGGTCAAGTCACTAAATACGCTAAATTTGTGACCCAGCTGGAAAAGGGCTTGCCACCTAACAGTGTGGTGCCCCAGCTCAAACAGAAGGTGGAGAGAATGAAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'10-21,'10-13,11-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTAATCTGGTGCCGGACT
R:
TTAGGTGGCAAGCCCTTTTCC
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]