DreEX6031404 @ danRer10
Exon Skipping
Gene
ENSDARG00000055559 | chrna6
Description
cholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
Coordinates
chr1:21804412-21821324:-
Coord C1 exon
chr1:21821109-21821324
Coord A exon
chr1:21808209-21808348
Coord C2 exon
chr1:21804412-21804456
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTGTATGCGTGTTTGTGCAGATT
3' ss Score
7.77
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAATCCGCCTCACGCGCTTTCTGCTCGCGCAGAGCTCAACTCAGGCGCACCAACGGGACCCAAAAACATATTTTCTACAGTTTGTTCCTTCTTGATTCGTACACGAATTTGCTACTTTGTTTTGGAAAGGGAGACGGTCTCCCTACCTGCGACGTCCGATGAATTCTGCGGGGAGAGTCACTTTGTTTTTTCTTTTAATTGCCCTGATAACGCAAG
Seq A exon
ATTGTTTCTCGTCTAAAGGAGAAGACAGGCTCTTTCGTCGTTTATTCAGGAGGTATAATCAGTTCATTCGGCCAGTGGAAAATGTGTCTGACCCTGTTACTGTGGAGTTTGAGGTCTCCATCTCACAGCTTGTTAAAGTG
Seq C2 exon
GATGAAGTCAATCAGATCATGGAAACAAACCTTTGGCTGAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055559-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
ENSDART00000031546fB1930
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACGCGCTTTCTGCTC
R:
TCTCAGCCAAAGGTTTGTTTCCA
Band lengths:
251-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]