RnoEX0021197 @ rn6
Exon Skipping
Gene
ENSRNOG00000013829 | Chrna3
Description
cholinergic receptor nicotinic alpha 3 subunit [Source:RGD Symbol;Acc:2345]
Coordinates
chr8:59604870-59607275:-
Coord C1 exon
chr8:59607059-59607275
Coord A exon
chr8:59605020-59605159
Coord C2 exon
chr8:59604870-59604914
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACAAGGATACCTCCTTCAGCGG
3' ss Score
0.69
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTGGCTGCCTGGGGTTCGTGCACTCGGGCGCGCAGGTGCGCCGGAGCTCGGCTGCGCGAAGCCGGGAGGAACTCCGCGGTGCCAGCACTTGAGTAGCTGTGCTTCGGTGGTCAGCACCAGAGTGGCTCCCTCCCTGTCTATCGGGTCTTAGACATGGGTGTTGTGCTGCTCCCGCCGCCGCTGTCCATGCTGATGCTGGTGCTGATGCTGCTGCCAG
Seq A exon
CGGCCAGTGCCTCAGAAGCTGAGCACCGCCTGTTCCAGTACCTGTTCGAAGATTACAACGAGATCATCCGGCCAGTGGCTAATGTGTCCCATCCAGTCATCATCCAGTTTGAGGTGTCCATGTCTCAGCTGGTGAAGGTG
Seq C2 exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013829-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGTTCGTGCACTCG
R:
CAGGTTGGTTTCCATGATCTGGT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]