GgaEX0003898 @ galGal4
Exon Skipping
Gene
ENSGALG00000003014 | CHRNA3
Description
Neuronal acetylcholine receptor subunit alpha-3 [Source:UniProtKB/Swiss-Prot;Acc:P09481]
Coordinates
chr10:3121889-3123670:+
Coord C1 exon
chr10:3121889-3122115
Coord A exon
chr10:3123416-3123555
Coord C2 exon
chr10:3123626-3123670
Length
140 bp
Sequences
Splice sites
3' ss Seq
CGCCTCACCCCGCCCCGCAGGCT
3' ss Score
8.03
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCCCAGCCCAGCTGACAGGAGCGCACTGCGCAGAGCCGTGCCGGGTGCTGCTGCTCCCAGGCATTGCACGCATCGCAGGAGCAGAGCTGCCCACACTTGCTGCACTCGTACAGTCCTGGCAGCTCAGCTTATCTCCGACAGCCTCTGCCAGCAGGCTGTAATTCATAGCACCATGCAGAGTATACACGCTCTCCTCTTAACTGCTGCTGTTTGCATCCTCTTTCAAG
Seq A exon
GCTGCGGCGGCTCCGAGCCCGAGCACCGGCTGTACGCGGCCCTCTTCAAGAACTACAACCAGTTCGTCCGCCCGGTAAAGAACGCCTCGGACCCCGTCATCATCCAGTTCGAGGTGTCCATGTCCCAGCTGGTCAAAGTG
Seq C2 exon
GACGAAGTCAACCAGATCATGGAGACCAACCTGTGGCTGAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003014-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGGAGCGCACTGC
R:
AGGTTGGTCTCCATGATCTGGT
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]