DreEX6034030 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55349623-55352000:-
Coord C1 exon
chr1:55351880-55352000
Coord A exon
chr1:55351660-55351775
Coord C2 exon
chr1:55349623-55349769
Length
116 bp
Sequences
Splice sites
3' ss Seq
CAGACTTGTGTGTGTTTCAGGCA
3' ss Score
8.61
5' ss Seq
TCGGTATAG
5' ss Score
3.75
Exon sequences
Seq C1 exon
ATCTGGGATGGAAGTGGGACCGCACAGTTGACGAAAAGACAGATCCTCCAGACCTTCCCTGAGATCAGGCAGCTTGTCGGCAAATCACTGTACATCTCAGTGAGTCTGCTAACCGAGTCTG
Seq A exon
GCAGTGAAATGGTGGAAGCTCACAAGAAAGGCATTCATATTGTGACGTCTCCTTACACCATCTATTTTAAGCGAACACCGCAGTTCTTCAAACCCGGAATGCCCTTCGATGTCTCG
Seq C2 exon
GTCTACGTAACAAACCCTGATGAGACGCCTGCTAAAAATGTGAAAGTGGAGGTCAATCCCGGAGGAGTCAGTGGTCAAACAAAAGCCAACGGCATTGCGAAAGTGACCATCAACACTCCAGGAGGATCTTCTACCTTGGAGATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGGATGGAAGTGGGACC
R:
TCCTCCTGGAGTGTTGATGGT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]