RnoEX6038519 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724724-9725306:+
Coord C1 exon
chr9:9724724-9724850
Coord A exon
chr9:9724959-9725074
Coord C2 exon
chr9:9725160-9725306
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGAACCATCCGTCTCCTCAGGTA
3' ss Score
6.63
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATCGAGGATGGTTCAGGGGAGGCAGTGCTCAGCCGAAAAGTGCTGATGGACGGGGTACGGCCCTCCAGCCCAGAAGCCCTAGTGGGGAAGTCCCTGTACGTCTCTGTCACTGTTATCCTGCACTCAG
Seq A exon
GTAGCGACATGGTAGAGGCAGAGCGCAGTGGGATCCCAATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCTTTCGACCTCATG
Seq C2 exon
GTGTTTGTGACCAACCCTGATGGCTCTCCAGCCCGCAGAGTGCCAGTAGTCACTCAGGGATCCGACGCGCAGGCTCTCACCCAGGATGATGGTGTGGCCAAGCTGAGCGTCAACACACCCAACAACCGCCAACCCCTGACTATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGGATGGTTCAGGGGAG
R:
TTGTTGGGTGTGTTGACGCTC
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]