MmuEX6078721 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57363254-57363836:-
Coord C1 exon
chr17:57363710-57363836
Coord A exon
chr17:57363486-57363601
Coord C2 exon
chr17:57363254-57363400
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTTCCATCCGTTTCCTCAGGTA
3' ss Score
8.96
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATTGAGGATGGTGTGGGGGATGCAGTGCTGACCCGGAAGGTGCTGATGGAGGGGGTACGGCCTTCCAACGCCGACGCCCTGGTGGGGAAGTCCCTGTATGTCTCCGTCACTGTCATCCTGCACTCAG
Seq A exon
GTAGTGACATGGTAGAGGCAGAGCGCAGTGGGATCCCGATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCCTTTGACCTCATG
Seq C2 exon
GTGTTCGTGACCAACCCCGATGGCTCTCCGGCCAGCAAAGTGCTGGTGGTCACTCAGGGATCTAATGCAAAGGCTCTCACCCAAGATGATGGCGTGGCCAAGCTAAGCATCAACACACCCAACAGCCGCCAACCCCTGACCATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGGATGGTGTGGGGGAT
R:
TGTTGATGCTTAGCTTGGCCA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: