DreEX6034120 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55527985-55530709:-
Coord C1 exon
chr1:55530608-55530709
Coord A exon
chr1:55528164-55528289
Coord C2 exon
chr1:55527985-55528086
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACACTGTTTACTGTTGCAGGTG
3' ss Score
9.62
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
Exon sequences
Seq C1 exon
AGGGTGAAGAGTCGCGCTCTGGAGGATGTGGTCATTTTAAACATCGACACCAACACCTTAGAGTCGCCTCATGAAGACCTGAAAAAGATACCGGCTGACGTG
Seq A exon
GTGGCGGGTCTGAAAGTCCGTCTGAAGCGGCAGGCAGCGGCGGCAGGATCAGGAGTCGCTCATGCATTTCTCAGAGCGCAGGCGCTGCTGTTCGGAGGATACAGAGATGCTTTACAGGCTCCTGCT
Seq C2 exon
GATGGGCCCGTGGTGTTCTGTACTGAGCTGTTTCTCAATCATAAATCTCCAAGCATGCGGGAGTTTCTGGAGAGCGCCGTCCATCTGCAGTGTTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(9.3=50.0)
A:
PF0345514=dDENN=PU(40.3=64.3)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAAGAGTCGCGCTC
R:
TCTTTGAAACACTGCAGATGGAC
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]