RnoEX6038532 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9976852-9977662:+
Coord C1 exon
chr9:9976852-9976953
Coord A exon
chr9:9977037-9977162
Coord C2 exon
chr9:9977558-9977662
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTCCTGTGTCTTCAGGTA
3' ss Score
9.73
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGAGTTCGGGAGAAAGCCCTGGAAGACGTTGTGGTGTTGAATGCAGACTCTAACACCCTGGAGACGCCCTTTGACGATGTGCAAGCTCTGCCGCCAGATGTG
Seq A exon
GTATCCCTGCTGAGGCTTCGGCTAAGGAAGGTTGCACTGAGCCCCGGGGAAGGGGTGTCTCGTCTCTTCCTCAAAGCCCAGGCCCTGCTCTTTGGAGGGTACCGTGACGCCCTGGTCTGCATCCCG
Seq C2 exon
GGTCAGCCAGTGACATTCAGTGAGGAGGCTTTCTTGGCTCAGAAGCCTGGGGCGCCCCTGCAGGCCTTCCACAAAAAGGCCGTACACTTGCAGCTCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(8.4=50.0)
A:
PF0345514=dDENN=PU(39.7=64.3)
C2:
PF0345514=dDENN=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGAGAAAGCCCTGGAAG
R:
CTGTTTGAAGAGCTGCAAGTGT
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]