MmuEX0014239 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57210342-57211312:-
Coord C1 exon
chr17:57211211-57211312
Coord A exon
chr17:57210995-57211120
Coord C2 exon
chr17:57210342-57210446
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGTCTCCCCTGTGTCCTCAGGTA
3' ss Score
10.37
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
AGAGTCCGAGAAAAAGCGCTGGAAGATGTTGTGGTGTTGAATGCAGACTCTAACACCCTGGAGACACCCTTTGACGATGTGCAAGCTCTGCCGCCGGATGTG
Seq A exon
GTATCCCTGCTGAGGCTTCGGCTAAGGAAGGTTGCCCTGAGCCCTGGGGAAGGGGTGTCCCGTCTCTTCCTCAAAGTGCAGGCCCTGCTCTTTGGAGGGTACCGTGATGCCCTTGTCTGCATCCCG
Seq C2 exon
GGTCAGCCAGTGACCTTCAGTGAGGAAGCTTTTTTGGCTCAGAAGCCCGGGGCACCCCTGCAGGCATTCCACAAAAAGGCGGTACACTTGCAGCTGTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(8.3=50.0)
A:
PF0345514=dDENN=PU(39.7=64.3)
C2:
PF0345514=dDENN=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCCGAGAAAAAGCGCTG
R:
TGAACAGCTGCAAGTGTACCG
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: