DreEX6034128 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55521766-55523596:-
Coord C1 exon
chr1:55523477-55523596
Coord A exon
chr1:55523030-55523112
Coord C2 exon
chr1:55521766-55521979
Length
83 bp
Sequences
Splice sites
3' ss Seq
GACTCCTGCTTTTCTTCCAGTCT
3' ss Score
8.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATCAGCCAGAGGCCTGTACGCTGCAGAGGGGCGGGTCTGTGTGTGAACCGCACACGTACCGCCTCATCCAATCAGACTGCCTTCAGAACCGTCTGCCAATCACACAGCACTTTGGCAAG
Seq A exon
TCTCGTCCTCGACGGCCTGCACAGAAACACCATCGGCAAAAAGAGCAAAAGACACCAGTTAACAACACCACCTATGAGGACAG
Seq C2 exon
CGCAGCAGATGCTGTAGATCAGTGTTCTGGCAGCAGTGACGTACAGGAGGAGGAGGAGGAGGATTTCTCTCTGCTGGCCGATGCGGAGGAGATGGACCTGCTGGGCGAGATCTTCGACACCCTGAGCGCTCAGAGCTCCAGAGAGCCGGGTTTACTGTACGGCACACGCAGCCTCGACCTCTTCCGCTCCGACAGCAGCGAATTCATCTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=1.000 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCACACAGCACTTTGGC
R:
AGTAAACCCGGCTCTCTGGAG
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]