MmuEX6078708 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57206155-57207123:-
Coord C1 exon
chr17:57207016-57207123
Coord A exon
chr17:57206472-57206539
Coord C2 exon
chr17:57206155-57206365
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTATCTTTTTCAGAAC
3' ss Score
11.45
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATGGAGACTCTGGCCTGCAGAGGGGGGGCTCCCTGAGAACCCCAAGCCTCACCAGCCGCTCTGATCGTCTGCAACAGCGCCTGCCTATTAGCCAGCACTTTGGACAG
Seq A exon
AACAGGCCCCTCCGCCCCAGCAGGAGACTCAAGACTGAAGAGGGACCTTCCGAACCCCTGCGGGAGAG
Seq C2 exon
GAGCCCCACCTTGAGCCCTGGGGACACTCAGAACCCCTGGGCAGAAGATACTCTAGATGGCAGCTTTCTGGGGTCTGGAGAAGAGCTGGATCTACTGAGTGAGATTCTAGACAGCCTGAACGTGGAAACCAAGAGTGGCGACCTGCAGAGGGCCAGCCAGAGCTTAGACTGCTGTCAGCGAGGGGCGGCGTCAGAGAGCTGCTCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'21-24,'21-22,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGATCGTCTGCAACAGCG
R:
TCTTGGTTTCCACGTTCAGGC
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: