RnoEX6038528 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9980337-9981644:+
Coord C1 exon
chr9:9980337-9980378
Coord A exon
chr9:9981285-9981352
Coord C2 exon
chr9:9981437-9981644
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTGATCTTTTTCAGAAC
3' ss Score
10.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGCAACAGCGCCTGCCTATCCAGCGCCACCACTTCGGACAG
Seq A exon
AACAGGCCCCTCCGTCCTAGCAGGAGACTCAAGCCGGAAGGGGGACCTTCTGAACCCCTGCAGGAGAG
Seq C2 exon
GAGCCCCACCTTGAACTCCAGGGACACTCAGAATCCCTGGGCAGAGGACACTCTAGACGGCAGCTTCCTGGGGTCTGGAGAGGAGCTGGATCTGCTGAGTGAGATCCTAGACAGTCTGAGTGTGGAAATCAAGAGTGGCGGCCAGCTGAGGGCCAGCCAGAGTCTGGACTGCTGTCAGCAAGGGGCCTCAGAGAGCTGTTCCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'30-43,'30-39,31-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCAGCGCCACCACTTC
R:
CCGCCACTCTTGATTTCCACA
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]