DreEX6034266 @ danRer10
Exon Skipping
Gene
ENSDARG00000104949 | slc27a1b
Description
solute carrier family 27 (fatty acid transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-061013-672]
Coordinates
chr1:57817642-57823955:-
Coord C1 exon
chr1:57823561-57823955
Coord A exon
chr1:57821946-57822107
Coord C2 exon
chr1:57817642-57817711
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGGATCTGCTGTTTCTGCAGTGG
3' ss Score
6.19
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
TGGTCTGCAAGTGTTACTGCGCGTCAAGTTCTACATGCGTCAGTACATCCGCAATCGCAGCACCATCCCGTCTCTATTCGCCCAGCGGGTGGCGCTGCACCCGGAGAAAGCGGCGCTGGTGGACGAGTCGTCAGGTGAGGTGTGGAGCTTCTCAGAGCTGGACCGGCGCTCCAACGCAGTGGCGCAGTGGGTGCTGGCGCAGGGCTGGCGGTCGGGTGATGTGGTGGCCATCTTCATGGAGAGTCGCCCCCAGATGGTGGCGCTGTGGCTCGGGATGGCTAAAGTAGGAGTGGAGCCGGCGCTCATCAACTTTAACCTGCGCCGTGATTCGCTGATACACTGCATGGGCGTGTCTGGGGCGTGTGGGATGGTGTTCGGGGCGGAGCTTTTGGATG
Seq A exon
TGGTGCTGGAGGTGAGGGAGTCTCTGCGCAGTCTCTCGCTCTTCTCCTGTGGTTCTGCTCCTGCAGAGATGCTGGACTCGCTGTCGGCTGCAGATCTGGACGCTCTTCTTTCCAAATCTCCTGAAACACCACCCGCTGTCGCACACAACAAGGGCTTCAACG
Seq C2 exon
ACAGGTTATTTTACATCTACACCTCAGGAACGACGGGTTTACCTAAAGCTGCCATCGTGGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104949-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.4=79.7)
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGTGGTGGCCATCTTC
R:
CACCACGATGGCAGCTTTAGG
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]