RnoEX0082068 @ rn6
Exon Skipping
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:20008690-20009500:+
Coord C1 exon
chr16:20008690-20009084
Coord A exon
chr16:20009193-20009354
Coord C2 exon
chr16:20009431-20009500
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTGAGCCTCTGTCACCACAGCGG
3' ss Score
5.7
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGACGACACCGGCGAGCAGGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGGAGCGCCTGGCGCTGGTAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTACTCCAATGCTGTGGCCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTGTTCCTGGAAGGCCGGCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGGCTGCGCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGG
Seq A exon
CGGTGGCGGAGGTGAGTGAGCAGCTGGGGAAGAGCCTGCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGCTTCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCATGGATG
Seq C2 exon
ATCGGCTATTTTACATCTATACTTCTGGGACCACCGGACTTCCTAAGGCGGCCATTGTGGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170-'16-7,'16-4,18-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.4=79.7)
A:
PF0050123=AMP-binding=FE(12.4=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCAATCTGTTCCTCCAG
R:
GTCCGGTGGTCCCAGAAGTAT
Band lengths:
256-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]