GgaEX0020010 @ galGal3
Exon Skipping
Gene
ENSGALG00000013303 | SLC27A1
Description
NA
Coordinates
chrUn_random:28117440-28119232:-
Coord C1 exon
chrUn_random:28118838-28119232
Coord A exon
chrUn_random:28118323-28118484
Coord C2 exon
chrUn_random:28117440-28117509
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGCTTTATGTTGCAGCAA
3' ss Score
9.65
5' ss Seq
ATGGTTGTG
5' ss Score
-7.21
Exon sequences
Seq C1 exon
TGGCCTCTCGGTGCTGTTACGAGTGAAGTACAAGTTACGATGGCACCAAAAAAACAAGAACACCGTTCCCAAGATGTTCCAGGACGTCGTCTGCCGGCACCCCGACAAAGTGGCCCTGATTTACGAGGCCACGGGTGAGAAGTGGACCTTCCGTTGGCTGGACAAGTATTCCAACGCCGTGGCCAACTTCTTCTACCAGCAGGGCTTCCGCCTCGGGGACGTCATTGCCATCTTCATGGAGAGCCGCCCCGAGTTCGTCGGCCTCTGGTTGGGGATGGCGAAAGTCGGCATCGAAGCGGCCCTCATTAACTTCAATCTGCGCTTGGATTCTCTGGTTTACTGCATAACGACGTCGGGTGCCAAAGCGGTGATTTTTGGAGGAGAGCTGTCCTCAG
Seq A exon
CAATAACCGAAGTGAATGGCATGCTGGGGAAGAACATGGCCAAGTTCTGCTCTGGTGACTACAACCCAGAAGTTGTTCCTGCAGAGACCAGGCACTTGGATCCTCTTCTGAGCACCGCATCGAAGTCACCACCAACTCAGATCCCGGCCAAAGGCTTGGATG
Seq C2 exon
ATCGTCTCTTTTACATCTACACTTCGGGTACGACGGGAATGCCCAAAGCTGCCATTGTGGTGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013303-'1-6,'1-5,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.1=79.7)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGCCAACTTCTTCTACC
R:
CCGTCGTACCCGAAGTGTAGA
Band lengths:
255-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]