DreEX0072439 @ danRer10
Exon Skipping
Gene
ENSDARG00000006240 | slc27a1a
Description
solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
Coordinates
chr3:52303505-52323347:+
Coord C1 exon
chr3:52303505-52303899
Coord A exon
chr3:52308800-52308964
Coord C2 exon
chr3:52323278-52323347
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCCTTCCTGTGTTTATATAGCTG
3' ss Score
8.87
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGGTCTTTATGTGCTGCTGAGGGTTAAACTGGCACTATGGCATTATATGCGCAACCGAAACACCATACCCTCCATCTTTGCACAAACTGTGGCTCGGCACCCAGACAAGCCTGCGCTTGTGTATGAAGCCACTGGGGAGACGTGGACTTTCTCCCAGTTAGATCAAATCTCCAATGCTGTGGCCCACTGGGCACTGAGCCAAGGCTGGACCTCAGGAGATGTGGTGGCGCTGTTCATGGAGAGCAGACCCCTTCAGGTGGCACTCTGGCTGGGCCTGGCCAAAGTCGGTGTGGAAGCTGCACTCATTAACTTCAACCTGCGAAGGGATTCGCTCCTGCACTGCGTGGGTGTTTCAGCTTCCAGGGGAATTGTTTTTGGAGCAGAGCTTGCTGACG
Seq A exon
CTGTGTCTGAAGTGAGCCACTCCTTGAGTCAGACCATGGTGCGGTTCAGCACAGGAGACCTCAAACCAGACCTGATGGCCACTCTCAAGTGTCAGCCTCTTGACCCCATCCTGGCATCTGCCCCTCGACACCCACCATCCTGCACTGTGTCCAAGGGCTTCAATG
Seq C2 exon
ATCATTTGTTCTACATCTACACGTCTGGCACCACAGGACTCCCTAAAGCTGCTATAGTGGTGCACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006240_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(24.4=79.7)
A:
PF0050123=AMP-binding=FE(12.6=100)
C2:
PF0050123=AMP-binding=FE(5.3=100)
Main Skipping Isoform:
ENSDART00000018908fB6039
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACCTCAGGAGATGT
R:
AGCAGCTTTAGGGAGTCCTGT
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]