DreEX6034748 @ danRer10
Exon Skipping
Gene
ENSDARG00000016611 | scrn3
Description
secernin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-4783]
Coordinates
chr9:2519066-2522636:-
Coord C1 exon
chr9:2522587-2522636
Coord A exon
chr9:2522078-2522238
Coord C2 exon
chr9:2519066-2519247
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTATTTATGTATTTGTTTAGATT
3' ss Score
7.65
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
AAAGGAAAAGGAAAGTAAACAGATGCTTGTTCTCTTCGAGCAGAACACAG
Seq A exon
ATTTCAGGATGTACCCAAGGTCTTGTGACACATTTGTAGCCTTGCCGCCGTCCACTGAGGGTCAGCGGATAATCTTCGGGAAGAACTCGGACAGACCCTGCGATGAGGTTCAGGAGGTGGTCTACTTCCCTGCAAAGGAACATGAACCAGGAAAAGTTGAG
Seq C2 exon
TGCACGTATATAGAAATCGAGCAGGTGGAAAAGACGTTTGCAGTGGTGCTGAGTCGCCCCGCCTGGCTGTGGGGGGCAGAGATGGGGGCAAATGAGCATCAGGTGTGCATTGGGAACGAGGCAGTGTGGGGCAGAGAGAGCGCGGATGGTGACGAGGCACTTCTGGGCATGGATCTTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016611-'0-2,'0-0,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0357710=Peptidase_C69=PU(26.3=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAAGGAAAGTAAACAGATGCT
R:
AAGATCCATGCCCAGAAGTGC
Band lengths:
226-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]