RnoEX0078704 @ rn6
Exon Skipping
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60024013-60028898:+
Coord C1 exon
chr3:60024013-60024059
Coord A exon
chr3:60026746-60026906
Coord C2 exon
chr3:60028717-60028898
Length
161 bp
Sequences
Splice sites
3' ss Seq
CACTTTTTTTTTTTTTAAAGAAA
3' ss Score
7
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTTGCTTCTCGTCGCTGTTACCCGGCGTCCGCGCGTGCGCAGCAGAG
Seq A exon
AAATGCAGCCCTATTCCTGTGACACGTTTGTGGCATTACCTCCAGCAACAGTTGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTTTCCAGCTGCAGTTCATAGTGATCTGGAAAAACGTCTCAAG
Seq C2 exon
TGTACTTATATAGAAGTCGATCAGGTTCCTGAAACATATGCTGTTGTTCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTATCTGGGGAAGAGAAGATATTTCTAAGGAGGAGGCACTTCTGGGCATGGACCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0357710=Peptidase_C69=PU(12.9=60.4)
C2:
PF0357710=Peptidase_C69=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCTCGTCGCTGTTACC
R:
GACAAGGTCCATGCCCAGAAG
Band lengths:
226-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]